Status
[November 2018] The Jahnula aquatica CBS 123560 genome was sequenced using Illumina technology and assembled together with SPAdes v3.12.0. Mitochondrial genome was assembled separately and is available in the downloads section.
Summary statistics for the Jahnula aquatica v1.0 release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 46.56 |
| Sequencing read coverage depth | 127.3x |
| # of contigs | 269 |
| # of scaffolds | 232 |
| # of scaffolds >= 2Kbp | 227 |
| Scaffold N50 | 38 |
| Scaffold L50 (Mbp) | 0.35 |
| # of gaps | 37 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.10, 1.04, 1.03 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 42204 | 40123 | 95.1% |
| Ests | est.fasta | 116449742 | 103568316 | 88.9% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1807 | 1578 |
| transcript | 1649 | 1439 |
| exon | 571 | 363 |
| intron | 86 | 60 |
| description: | ||
| protein length (aa) | 475 | 396 |
| exons per gene | 2.89 | 2 |
| # of gene models | 15525 |
Collaborators
Jon Magnuson, Pacific Northwest National Laboratory, USA
Joseph Spatafora, Oregon State University, USA
Links
JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Dothideomycetes
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
