Info • Kretzschmaria deusta CBS 826.72 v1.0

Status

[June 2019] The Kretzschmaria deusta CBS 826.72 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Kretzschmaria deusta CBS 826.72 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 49.73
Sequencing read coverage depth 113.200180862069x
# of contigs 1440
# of scaffolds 1433
# of scaffolds >= 2Kbp 1198
Scaffold N50 81
Scaffold L50 (Mbp) 0.17
# of gaps 7
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.95, 0.87, 0.64


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 58713 57897 98.6%
Ests est.fasta 214502888 213650194 99.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 2002 1783
transcript 1803 1593
exon 580 359
intron 96 68
description:
protein length (aa) 474 393
exons per gene 3.11 3
# of gene models 12520


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Franco MEE, Wisecaver JH, Arnold AE, Ju YM, Slot JC, Ahrendt S, Moore LP, Eastman KE, Scott K, Konkel Z, Mondo SJ, Kuo A, Hayes RD, Haridas S, Andreopoulos B, Riley R, LaButti K, Pangilinan J, Lipzen A, Amirebrahimi M, Yan J, Adam C, Keymanesh K, Ng V, Louie K, Northen T, Drula E, Henrissat B, Hsieh HM, Youens-Clark K, Lutzoni F, Miadlikowska J, Eastwood DC, Hamelin RC, Grigoriev IV, U'Ren JM
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes.
New Phytol. 2022 Feb;233(3):1317-1330. doi: 10.1111/nph.17873

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.