Info • Klebsormidium nitens NIES-2285

Status

The Klebsormidium nitens NIES-2285 genome sequence and gene models have not been determined by the JGI, but were downloaded from NCBI on September 23, 2019. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Klebsormidium nitens NIES-2285 release are below.
Genome Assembly
Genome Assembly size (Mbp) 103.92
Sequencing read coverage depth 40x
# of contigs 3364
# of scaffolds 1812
# of scaffolds >= 2Kbp 1812
Scaffold N50 229
Scaffold L50 (Mbp) 0.13
# of gaps 1552
% of scaffold length in gaps 1.0%
Three largest Scaffolds (Mbp) 0.54, 0.53, 0.52


Gene Models ExternalModels
length (bp) of: average median
gene 4965 4157
transcript 2042 1742
exon 297 177
intron 499 429
description:
protein length (aa) 542 421
exons per gene 6.88 6
# of gene models 16132


Genome Reference(s)

Funding

This project was not sequenced at the JGI.