Status
The Klebsormidium nitens NIES-2285 genome sequence and gene models have not been determined by the JGI, but were downloaded from NCBI on September 23, 2019. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Summary statistics for the Klebsormidium nitens NIES-2285
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 103.92 |
| Sequencing read coverage depth | 40x |
| # of contigs | 3364 |
| # of scaffolds | 1812 |
| # of scaffolds >= 2Kbp | 1812 |
| Scaffold N50 | 229 |
| Scaffold L50 (Mbp) | 0.13 |
| # of gaps | 1552 |
| % of scaffold length in gaps | 1.0% |
| Three largest Scaffolds (Mbp) | 0.54, 0.53, 0.52 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 4965 | 4157 |
| transcript | 2042 | 1742 |
| exon | 297 | 177 |
| intron | 499 | 429 |
| description: | ||
| protein length (aa) | 542 | 421 |
| exons per gene | 6.88 | 6 |
| # of gene models | 16132 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Hori K, Maruyama F, Fujisawa T, Togashi T, Yamamoto N, Seo M, Sato S, Yamada T, Mori H, Tajima N, Moriyama T, Ikeuchi M, Watanabe M, Wada H, Kobayashi K, Saito M, Masuda T, Sasaki-Sekimoto Y, Mashiguchi K, Awai K, Shimojima M, Masuda S, Iwai M, Nobusawa T, Narise T, Kondo S, Saito H, Sato R, Murakawa M, Ihara Y, Oshima-Yamada Y, Ohtaka K, Satoh M, Sonobe K, Ishii M, Ohtani R, Kanamori-Sato M, Honoki R, Miyazaki D, Mochizuki H, Umetsu J, Higashi K, Shibata D, Kamiya Y, Sato N, Nakamura Y, Tabata S, Ida S, Kurokawa K, Ohta H
Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation.
Nat Commun. 2014 May 28;5():3978. doi: 10.1038/ncomms4978
Hori K, Maruyama F, Fujisawa T, Togashi T, Yamamoto N, Seo M, Sato S, Yamada T, Mori H, Tajima N, Moriyama T, Ikeuchi M, Watanabe M, Wada H, Kobayashi K, Saito M, Masuda T, Sasaki-Sekimoto Y, Mashiguchi K, Awai K, Shimojima M, Masuda S, Iwai M, Nobusawa T, Narise T, Kondo S, Saito H, Sato R, Murakawa M, Ihara Y, Oshima-Yamada Y, Ohtaka K, Satoh M, Sonobe K, Ishii M, Ohtani R, Kanamori-Sato M, Honoki R, Miyazaki D, Mochizuki H, Umetsu J, Higashi K, Shibata D, Kamiya Y, Sato N, Nakamura Y, Tabata S, Ida S, Kurokawa K, Ohta H
Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation.
Nat Commun. 2014 May 28;5():3978. doi: 10.1038/ncomms4978
Links
- JGI Algae EcoGroup Portal
- JGI PhyloGroup Portals: Archaeplastida Viridiplantae Streptophyta Klebsormidiophyceae
Funding
This project was not sequenced at the JGI.
