Info • Lactarius akahatsu QP v1.0

Status

[August 2018] (August 2018) The Lactarius akahatsu genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Lactarius akahatsu QP v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 80.30
Sequencing read coverage depth 175.06x
# of contigs 844
# of scaffolds 844
# of scaffolds >= 2Kbp 838
Scaffold N50 73
Scaffold L50 (Mbp) 0.25
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.69, 2.03, 1.54


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 90291 82039 90.9%
Ests est.fasta 255039143 250288458 98.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1781 1534
transcript 1452 1231
exon 241 153
intron 68 57
description:
protein length (aa) 420 340
exons per gene 6.02 5
# of gene models 12853


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Lebreton A, Tang N, Kuo A, LaButti K, Andreopoulos W, Drula E, Miyauchi S, Barry K, Clum A, Lipzen A, Mousain D, Ng V, Wang R, Dai Y, Henrissat B, Grigoriev IV, Guerin-Laguette A, Yu F, Martin FM
Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk-cap (Lactarius) mushrooms.
New Phytol. 2022 Apr 5;():. doi: 10.1111/nph.18143

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.