Status
Assembly v1 (Jun 2015) is a standard draft assembly from Illumina gDNAs using AllPathsLG.
Summary statistics for the Laccaria bicolor S238N-H53 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 51.78 |
| Sequencing read coverage depth | 86.5x |
| # of contigs | 3014 |
| # of scaffolds | 1284 |
| # of scaffolds >= 2Kbp | 920 |
| Scaffold N50 | 88 |
| Scaffold L50 (Mbp) | 0.16 |
| # of gaps | 1730 |
| % of scaffold length in gaps | 4.2% |
| Three largest Scaffolds (Mbp) | 1.08, 0.92, 0.92 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | INRA_RNA_contigs | 12729 | 11498 | 90.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1536 | 1247 |
| transcript | 1217 | 957 |
| exon | 230 | 144 |
| intron | 76 | 56 |
| description: | ||
| protein length (aa) | 373 | 287 |
| exons per gene | 5.29 | 4 |
| # of gene models | 18468 |
Collaborators
- DOE Joint Genome Institute
- Francis Martin at MycorWeb
- Annegret Kohler at MycorWeb
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
