Status
Assembly v1 (Sep 2013) is an improved draft assembly. A total of 1427 scaffolds and 52.0 Mbp were assembled from Illumina gDNAs using AllPathsLG and improved with PacBio reads and PBJelly.
Summary statistics for the Laccaria bicolor S238N-H82 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 52.02 |
| Sequencing read coverage depth | 107.2x |
| # of contigs | 2088 |
| # of scaffolds | 1427 |
| # of scaffolds >= 2Kbp | 1029 |
| Scaffold N50 | 66 |
| Scaffold L50 (Mbp) | 0.21 |
| # of gaps | 661 |
| % of scaffold length in gaps | 1.3% |
| Three largest Scaffolds (Mbp) | 1.07, 1.01, 0.88 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | INRA_RNA_contigs | 12885 | 11562 | 89.7% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1551 | 1245 |
| transcript | 1211 | 948 |
| exon | 228 | 142 |
| intron | 81 | 56 |
| description: | ||
| protein length (aa) | 373 | 285 |
| exons per gene | 5.31 | 4 |
| # of gene models | 18706 |
Collaborators
- DOE Joint Genome Institute
- Francis Martin at MycorWeb
- Annegret Kohler at MycorWeb
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
