Status
Assembly v1 (Jun 2015) is a standard draft assembly from Illumina gDNAs using AllPathsLG.
Summary statistics for the Laccaria bicolor S238N v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 67.66 |
| Sequencing read coverage depth | 69.4x |
| # of contigs | 6556 |
| # of scaffolds | 1577 |
| # of scaffolds >= 2Kbp | 1227 |
| Scaffold N50 | 113 |
| Scaffold L50 (Mbp) | 0.16 |
| # of gaps | 4979 |
| % of scaffold length in gaps | 11.6% |
| Three largest Scaffolds (Mbp) | 1.25, 1.07, 0.98 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | INRA_RNA_contigs | 19243 | 16052 | 83.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1460 | 1152 |
| transcript | 1144 | 877 |
| exon | 227 | 142 |
| intron | 80 | 56 |
| description: | ||
| protein length (aa) | 351 | 262 |
| exons per gene | 5.04 | 4 |
| # of gene models | 21724 |
Collaborators
- DOE Joint Genome Institute
- Francis Martin at MycorWeb
- Annegret Kohler at MycorWeb
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
