Status
Assembly v1 (Sep 2015) is a standard draft assembly from Illumina gDNAs using AllPathsLG.
Summary statistics for the Laccaria bicolor S238O v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 57.06 |
| Sequencing read coverage depth | 132.4x |
| # of contigs | 3633 |
| # of scaffolds | 1370 |
| # of scaffolds >= 2Kbp | 1024 |
| Scaffold N50 | 68 |
| Scaffold L50 (Mbp) | 0.20 |
| # of gaps | 2263 |
| % of scaffold length in gaps | 4.3% |
| Three largest Scaffolds (Mbp) | 1.13, 1.08, 1.04 |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1494 | 1222 |
| transcript | 1165 | 927 |
| exon | 220 | 135 |
| intron | 79 | 56 |
| description: | ||
| protein length (aa) | 388 | 309 |
| exons per gene | 5.29 | 4 |
| # of gene models | 17767 |
Collaborators
- DOE Joint Genome Institute
- Francis Martin at MycorWeb
- Annegret Kohler at MycorWeb
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
