Status
The genome sequence and gene models of Lachancea thermotolerans CBS 6340 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
Summary statistics for the Lachancea thermotolerans CBS
6340 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 10.39 |
| Sequencing read coverage depth | |
| # of contigs | 10 |
| # of scaffolds | 8 |
| # of scaffolds >= 2Kbp | 8 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 1.51 |
| # of gaps | 2 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.72, 1.63, 1.52 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1484 | 1236 |
| transcript | 1476 | 1230 |
| exon | 1398 | 1170 |
| intron | 149 | 82 |
| description: | ||
| protein length (aa) | 492 | 410 |
| exons per gene | 1.06 | 1 |
| # of gene models | 5092 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Souciet JL, Dujon B, Gaillardin C, Johnston M, Baret PV, Cliften P, Sherman DJ, Weissenbach J, Westhof E, Wincker P, Jubin C, Poulain J, Barbe V, Ségurens B, Artiguenave F, Anthouard V, Vacherie B, Val ME, Fulton RS, Minx P, Wilson R, Durrens P, Jean G, Marck C, Martin T, Nikolski M, Rolland T, Seret ML, Casarégola S, Despons L, Fairhead C, Fischer G, Lafontaine I, Leh V, Lemaire M, de Montigny J, Neuvéglise C, Thierry A, Blanc-Lenfle I, Bleykasten C, Diffels J, Fritsch E, Frangeul L, Goëffon A, Jauniaux N, Kachouri-Lafond R, Payen C, Potier S, Pribylova L, Ozanne C, Richard GF, Sacerdot C, Straub ML, Talla E
Comparative genomics of protoploid Saccharomycetaceae.
Genome Res. 2009 Oct;19(10):1696-709. doi: 10.1101/gr.091546.109
Souciet JL, Dujon B, Gaillardin C, Johnston M, Baret PV, Cliften P, Sherman DJ, Weissenbach J, Westhof E, Wincker P, Jubin C, Poulain J, Barbe V, Ségurens B, Artiguenave F, Anthouard V, Vacherie B, Val ME, Fulton RS, Minx P, Wilson R, Durrens P, Jean G, Marck C, Martin T, Nikolski M, Rolland T, Seret ML, Casarégola S, Despons L, Fairhead C, Fischer G, Lafontaine I, Leh V, Lemaire M, de Montigny J, Neuvéglise C, Thierry A, Blanc-Lenfle I, Bleykasten C, Diffels J, Fritsch E, Frangeul L, Goëffon A, Jauniaux N, Kachouri-Lafond R, Payen C, Potier S, Pribylova L, Ozanne C, Richard GF, Sacerdot C, Straub ML, Talla E
Comparative genomics of protoploid Saccharomycetaceae.
Genome Res. 2009 Oct;19(10):1696-709. doi: 10.1101/gr.091546.109
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Saccharomycetaceae
Funding
This project was not sequenced at the JGI.
