Status
[May 2024] The Lipomyces doorenjongii NRRL Y-11560 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 19.49 |
| Sequencing read coverage depth | 357.87x |
| # of contigs | 438 |
| # of scaffolds | 431 |
| # of scaffolds >= 2Kbp | 377 |
| Scaffold N50 | 40 |
| Scaffold L50 (Mbp) | 0.14 |
| # of gaps | 7 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.58, 0.54, 0.49 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 33156 | 30695 | 92.6% |
| Ests | est.fasta | 387289071 | 383827321 | 99.1% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1926 | 1715 |
| transcript | 1786 | 1583 |
| exon | 577 | 348 |
| intron | 69 | 57 |
| description: | ||
| protein length (aa) | 447 | 374 |
| exons per gene | 3.10 | 3 |
| # of gene models | 7548 |
Collaborators
- Kyle Pomraning, Pacific Northwest National Laboratory, WA
- Scott Baker, Environmental Molecular Science Laboratory, WA
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Lipomycetaceae Lipomyces
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
