Info • Lentinula edodes TMI1148 v1.0

Status

[August 2019] The Lentinula edodes TMI1148 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Lentinula edodes TMI1148 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.82
Sequencing read coverage depth 204.673568744939x
# of contigs 1985
# of scaffolds 1913
# of scaffolds >= 2Kbp 1439
Scaffold N50 170
Scaffold L50 (Mbp) 0.07
# of gaps 72
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.33, 0.30, 0.29


Gene Models FilteredModels1
length (bp) of: average median
gene 1636 1360
transcript 1287 1050
exon 214 134
intron 72 58
description:
protein length (aa) 429 350
exons per gene 6.01 5
# of gene models 13370


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Sierra-Patev Sean, Min Byoungnam, Naranjo-Ortiz Miguel, Looney Brian, Konkel Zachary, Slot Jason C., Sakamoto Yuichi, Steenwyk Jacob L., Rokas Antonis, Carro Juan, Camarero Susana, Ferreira Patricia, Molpeceres Gonzalo, Ruiz-Dueñas Francisco J., Serrano Ana, Henrissat Bernard, Drula Elodie, Hughes Karen W., Mata Juan L., Ishikawa Noemia Kazue, Vargas-Isla Ruby, Ushijima Shuji, Smith Chris A., Donoghue John, Ahrendt Steven, Andreopoulos William, He Guifen, LaButti Kurt, Lipzen Anna, Ng Vivian, Riley Robert, Sandor Laura, Barry Kerrie, Martínez Angel T., Xiao Yang, Gibbons John G., Terashima Kazuhisa, Grigoriev Igor V., Hibbett David
A global phylogenomic analysis of the shiitake genus <i>Lentinula</i>
Proc. Natl. Acad. Sci. U.S.A.. 2023;120(10): doi: 10.1073/pnas.2214076120

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.