Status
Nov 2014. The Leiotrametes sp. BRFM 1775 genome was sequenced using Illumina technology and assembled with AllPathsLG release version R46652.
Summary statistics for the Leiotrametes sp BRFM 1775 v1.0
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 34.52 |
| Sequencing read coverage depth | 142.4x |
| # of contigs | 598 |
| # of scaffolds | 549 |
| # of scaffolds >= 2Kbp | 455 |
| Scaffold N50 | 50 |
| Scaffold L50 (Mbp) | 0.19 |
| # of gaps | 49 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 0.77, 0.74, 0.74 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 42279 | 41601 | 98.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1813 | 1557 |
| transcript | 1484 | 1265 |
| exon | 258 | 155 |
| intron | 71 | 60 |
| description: | ||
| protein length (aa) | 416 | 342 |
| exons per gene | 5.75 | 4 |
| # of gene models | 13763 |
Collaborators
Eric Record (PI) and Marie-Noëlle Rosso, Biodiversity and Biotechnology of Fungi, INRA - Aix Marseille Université
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Hage H, Miyauchi S, Virágh M, Drula E, Min B, Chaduli D, Navarro D, Favel A, Norest M, Lesage-Meessen L, Bálint B, Merényi Z, de Eugenio L, Morin E, MartÃnez AT, Baldrian P, Å tursová M, MartÃnez MJ, Novotny C, Magnuson JK, Spatafora JW, Maurice S, Pangilinan J, Andreopoulos W, LaButti K, Hundley H, Na H, Kuo A, Barry K, Lipzen A, Henrissat B, Riley R, Ahrendt S, Nagy LG, Grigoriev IV, Martin F, Rosso MN
Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay.
Environ Microbiol. 2021 Oct;23(10):5716-5732. doi: 10.1111/1462-2920.15423
Hage H, Miyauchi S, Virágh M, Drula E, Min B, Chaduli D, Navarro D, Favel A, Norest M, Lesage-Meessen L, Bálint B, Merényi Z, de Eugenio L, Morin E, MartÃnez AT, Baldrian P, Å tursová M, MartÃnez MJ, Novotny C, Magnuson JK, Spatafora JW, Maurice S, Pangilinan J, Andreopoulos W, LaButti K, Hundley H, Na H, Kuo A, Barry K, Lipzen A, Henrissat B, Riley R, Ahrendt S, Nagy LG, Grigoriev IV, Martin F, Rosso MN
Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay.
Environ Microbiol. 2021 Oct;23(10):5716-5732. doi: 10.1111/1462-2920.15423
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
