Status
The Lentinula edodes NBRC 111202 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl on Aug 19, 2017. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Summary statistics for the Lentinula edodes NBRC 111202
release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 39.92 |
Sequencing read coverage depth | 50x |
# of contigs | 2973 |
# of scaffolds | 1951 |
# of scaffolds >= 2Kbp | 1003 |
Scaffold N50 | 109 |
Scaffold L50 (Mbp) | 0.10 |
# of gaps | 1022 |
% of scaffold length in gaps | 2.4% |
Three largest Scaffolds (Mbp) | 0.59, 0.42, 0.40 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1869 | 1481 |
transcript | 1322 | 1044 |
exon | 167 | 97 |
intron | 81 | 59 |
description: | ||
protein length (aa) | 441 | 348 |
exons per gene | 7.94 | 6 |
# of gene models | 12051 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Sakamoto Y, Nakade K, Sato S, Yoshida K, Miyazaki K, Natsume S, Konno N
Lentinula edodes Genome Survey and Postharvest Transcriptome Analysis.
Appl Environ Microbiol. 2017 May 15;83(10):. doi: 10.1128/AEM.02990-16
Sakamoto Y, Nakade K, Sato S, Yoshida K, Miyazaki K, Natsume S, Konno N
Lentinula edodes Genome Survey and Postharvest Transcriptome Analysis.
Appl Environ Microbiol. 2017 May 15;83(10):. doi: 10.1128/AEM.02990-16
Links
- JGI PhyloGroup Portals: Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricales Lentinula
Funding
This project was not sequenced at the JGI.