Status
The genome of Leptosphaeria maculans was not sequenced by the JGI, but by Genoscope EVRY. A consortium led by the URGI-INRA annotated the genome. The genome sequence and gene predictions were downloaded from the URGI-INRA website. JGI tools have been used to annotate these gene predictions.
Summary statistics for the Leptosphaeria maculans release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 44.89 |
| Sequencing read coverage depth | 8.31 |
| # of contigs | 1578 |
| # of scaffolds | 41 |
| # of scaffolds >= 2Kbp | 41 |
| Scaffold N50 | 10 |
| Scaffold L50 (Mbp) | 1.77 |
| # of gaps | 1537 |
| % of scaffold length in gaps | 2.5% |
| Three largest Scaffolds (Mbp) | 4.26, 3.38, 2.94 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1446 | 1162 |
| transcript | 1258 | 1002 |
| exon | 446 | 214 |
| intron | 105 | 65 |
| description: | ||
| protein length (aa) | 419 | 334 |
| exons per gene | 2.82 | 2 |
| # of gene models | 12469 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Rouxel T, Grandaubert J, Hane JK, Hoede C, van de Wouw AP, Couloux A, Dominguez V, Anthouard V, Bally P, Bourras S, Cozijnsen AJ, Ciuffetti LM, Degrave A, Dilmaghani A, Duret L, Fudal I, Goodwin SB, Gout L, Glaser N, Linglin J, Kema GH, Lapalu N, Lawrence CB, May K, Meyer M, Ollivier B, Poulain J, Schoch CL, Simon A, Spatafora JW, Stachowiak A, Turgeon BG, Tyler BM, Vincent D, Weissenbach J, Amselem J, Quesneville H, Oliver RP, Wincker P, Balesdent MH, Howlett BJ
Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations.
Nat Commun. 2011 Feb 15;2():202. doi: 10.1038/ncomms1189
Rouxel T, Grandaubert J, Hane JK, Hoede C, van de Wouw AP, Couloux A, Dominguez V, Anthouard V, Bally P, Bourras S, Cozijnsen AJ, Ciuffetti LM, Degrave A, Dilmaghani A, Duret L, Fudal I, Goodwin SB, Gout L, Glaser N, Linglin J, Kema GH, Lapalu N, Lawrence CB, May K, Meyer M, Ollivier B, Poulain J, Schoch CL, Simon A, Spatafora JW, Stachowiak A, Turgeon BG, Tyler BM, Vincent D, Weissenbach J, Amselem J, Quesneville H, Oliver RP, Wincker P, Balesdent MH, Howlett BJ
Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations.
Nat Commun. 2011 Feb 15;2():202. doi: 10.1038/ncomms1189
Funding
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