Status
[Dec 2015] The Leptodontidium sp. PMI412 genome was sequenced using the Illumina platform and assembled together with AllPathsLG version R46652, (Gnerre et al., 2010). Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 73.78 |
| Sequencing read coverage depth | 140.9x |
| # of contigs | 966 |
| # of scaffolds | 815 |
| # of scaffolds >= 2Kbp | 728 |
| Scaffold N50 | 67 |
| Scaffold L50 (Mbp) | 0.31 |
| # of gaps | 151 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 2.06, 1.58, 1.21 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 30358 | 29257 | 96.4% |
| Ests | est.fasta | 145540822 | 75946363 | 52.2% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1550 | 1331 |
| transcript | 1373 | 1162 |
| exon | 453 | 288 |
| intron | 89 | 59 |
| description: | ||
| protein length (aa) | 404 | 332 |
| exons per gene | 3.03 | 3 |
| # of gene models | 22064 |
Collaborators
Gregory Bonito, Michigan State University
Joseph Spatafora, Oregon State University
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
