Status
The assembly and annotation of Lichtheimia corymbifera were not determined at JGI, but were imported for comparative purposes. Please cite Schwartze et al., 2014 if you use these data in your research.
Summary statistics for the Lichtheimia corymbifera
JMRC:FSU:9682 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 33.53 |
| Sequencing read coverage depth | |
| # of contigs | 562 |
| # of scaffolds | 207 |
| # of scaffolds >= 2Kbp | 206 |
| Scaffold N50 | 25 |
| Scaffold L50 (Mbp) | 0.37 |
| # of gaps | 355 |
| % of scaffold length in gaps | 7.6% |
| Three largest Scaffolds (Mbp) | 1.31, 1.25, 1.22 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1602 | 1332 |
| transcript | 1293 | 1047 |
| exon | 259 | 151 |
| intron | 72 | 64 |
| description: | ||
| protein length (aa) | 431 | 349 |
| exons per gene | 4.99 | 4 |
| # of gene models | 13404 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Schwartze VU, Winter S, Shelest E, Marcet-Houben M, Horn F, Wehner S, Linde J, Valiante V, Sammeth M, Riege K, Nowrousian M, Kaerger K, Jacobsen ID, Marz M, Brakhage AA, Gabaldón T, Böcker S, Voigt K
Gene expansion shapes genome architecture in the human pathogen Lichtheimia corymbifera: an evolutionary genomics analysis in the ancient terrestrial mucorales (Mucoromycotina).
PLoS Genet. 2014 Aug;10(8):e1004496. doi: 10.1371/journal.pgen.1004496
Schwartze VU, Winter S, Shelest E, Marcet-Houben M, Horn F, Wehner S, Linde J, Valiante V, Sammeth M, Riege K, Nowrousian M, Kaerger K, Jacobsen ID, Marz M, Brakhage AA, Gabaldón T, Böcker S, Voigt K
Gene expansion shapes genome architecture in the human pathogen Lichtheimia corymbifera: an evolutionary genomics analysis in the ancient terrestrial mucorales (Mucoromycotina).
PLoS Genet. 2014 Aug;10(8):e1004496. doi: 10.1371/journal.pgen.1004496
Funding
This project was not sequenced at the JGI.
