Info • Lindra thalassiae JK4322 v1.0

Status

[May 2015] The Lindra thalassiae JK4322 genome was sequenced using Illumina and assembled using AllPathsLG (Gnerre et al. 2010).

 

Summary statistics for the Lindra thallasiae JK4322 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 31.92
Sequencing read coverage depth 145
# of contigs 173
# of scaffolds 149
# of scaffolds >= 2Kbp 135
Scaffold N50 19
Scaffold L50 (Mbp) 0.48
# of gaps 24
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.22, 1.45, 1.12


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 28555 27848 97.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1815 1584
transcript 1622 1390
exon 622 366
intron 122 83
description:
protein length (aa) 470 385
exons per gene 2.61 2
# of gene models 8029


Collaborators

Derek Johnson, Oregon State University

Joey Spatafora, Oregon State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.