Info • Lipomyces tetrasporus NRRL Y-11562 v1.0

Status

[July 2022] This genome was sequenced with Illumina, assembled with SPAdes v3.15.2, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 20.46
Sequencing read coverage depth 332.81x
# of contigs 415
# of scaffolds 410
# of scaffolds >= 2Kbp 350
Scaffold N50 37
Scaffold L50 (Mbp) 0.17
# of gaps 5
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.82, 0.78, 0.49


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 32480 29748 91.6%
Ests est.fasta 265685788 263313945 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1752 1547
transcript 1616 1415
exon 530 324
intron 68 57
description:
protein length (aa) 437 362
exons per gene 3.05 3
# of gene models 8129


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Front Bioeng Biotechnol. 2024;12():1356551. doi: 10.3389/fbioe.2024.1356551

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.