Status
(May 2015) The Lollipopaia minuta P26 genome was sequenced using Illumina and assembled using AllPathsLG (Gnerre et al. 2010).
Summary statistics for the Lollipopaia minuta P26; CBS
116597 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 37.42 |
| Sequencing read coverage depth | 138 |
| # of contigs | 427 |
| # of scaffolds | 380 |
| # of scaffolds >= 2Kbp | 349 |
| Scaffold N50 | 51 |
| Scaffold L50 (Mbp) | 0.21 |
| # of gaps | 47 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 0.73, 0.73, 0.64 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 29168 | 28596 | 98.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1746 | 1513 |
| transcript | 1559 | 1329 |
| exon | 572 | 360 |
| intron | 110 | 78 |
| description: | ||
| protein length (aa) | 437 | 356 |
| exons per gene | 2.73 | 2 |
| # of gene models | 11996 |
Collaborators
Patrik Inderbitzin, University of California, Davis
Joey Spatafora, Oregon State University
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
