Status
[April 2024] The Lipomyces starkeyi Phaff 78-23 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 19.76 |
| Sequencing read coverage depth | 365.52x |
| # of contigs | 580 |
| # of scaffolds | 566 |
| # of scaffolds >= 2Kbp | 504 |
| Scaffold N50 | 59 |
| Scaffold L50 (Mbp) | 0.10 |
| # of gaps | 14 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.46, 0.39, 0.30 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 26545 | 25278 | 95.2% |
| Ests | est.fasta | 77609178 | 76929194 | 99.1% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1754 | 1543 |
| transcript | 1618 | 1414 |
| exon | 531 | 319 |
| intron | 68 | 57 |
| description: | ||
| protein length (aa) | 440 | 365 |
| exons per gene | 3.05 | 3 |
| # of gene models | 7666 |
Collaborators
- Kyle Pomraning, Pacific Northwest National Laboratory, WA
- Scott Baker, Environmental Molecular Science Laboratory, WA
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Saccharomycotina Saccharomycetes Saccharomycetales Lipomycetaceae Lipomyces
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
