Status
This genome was sequenced by Md Shahidul Islam, Maqsudul Alam ([email protected]) et al. in Basic and Applied Research on Jute Project, Bangladesh Jute Research Institute, Manik Mia Avenue, Dhaka 1207, Bangladesh (Md Shahidul Islam et al, 2012).
Summary statistics for the Macrophomina phaseolina MS6
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 48.88 |
| Sequencing read coverage depth | 66x |
| # of contigs | 1506 |
| # of scaffolds | 1506 |
| # of scaffolds >= 2Kbp | 829 |
| Scaffold N50 | 91 |
| Scaffold L50 (Mbp) | 0.15 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.14, 1.01, 0.64 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1419 | 1146 |
| transcript | 1288 | 1020 |
| exon | 514 | 307 |
| intron | 89 | 60 |
| description: | ||
| protein length (aa) | 429 | 340 |
| exons per gene | 2.50 | 2 |
| # of gene models | 13806 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Islam MS, Haque MS, Islam MM, Emdad EM, Halim A, Hossen QM, Hossain MZ, Ahmed B, Rahim S, Rahman MS, Alam MM, Hou S, Wan X, Saito JA, Alam M
Tools to kill: genome of one of the most destructive plant pathogenic fungi Macrophomina phaseolina.
BMC Genomics. 2012 Sep 19;13():493. doi: 10.1186/1471-2164-13-493
Islam MS, Haque MS, Islam MM, Emdad EM, Halim A, Hossen QM, Hossain MZ, Ahmed B, Rahim S, Rahman MS, Alam MM, Hou S, Wan X, Saito JA, Alam M
Tools to kill: genome of one of the most destructive plant pathogenic fungi Macrophomina phaseolina.
BMC Genomics. 2012 Sep 19;13():493. doi: 10.1186/1471-2164-13-493
Funding
This project was not sequenced at the JGI.
