Info • Macrophomina phaseolina MS6

Status

This genome was sequenced by Md Shahidul Islam, Maqsudul Alam (maqsudul@jutegenome.org) et al. in Basic and Applied Research on Jute Project, Bangladesh Jute Research Institute, Manik Mia Avenue, Dhaka 1207, Bangladesh (Md Shahidul Islam et al, 2012).

Summary statistics for the Macrophomina phaseolina MS6 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 48.88
Sequencing read coverage depth 66x
# of contigs 1506
# of scaffolds 1506
# of scaffolds >= 2Kbp 829
Scaffold N50 91
Scaffold L50 (Mbp) 0.15
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.14, 1.01, 0.64


Gene Models ExternalModels
length (bp) of: average median
gene 1419 1146
transcript 1288 1020
exon 514 307
intron 89 60
description:
protein length (aa) 429 340
exons per gene 2.50 2
# of gene models 13806


Genome Reference(s)

Funding

This project was not sequenced at the JGI.