Status
The genome sequence and gene models of Madurella mycetomatis mm55 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
Summary statistics for the Madurella mycetomatis mm55 are
below.
Genome Assembly | |
Genome Assembly size (Mbp) | 36.70 |
Sequencing read coverage depth | 43.5x |
# of contigs | 824 |
# of scaffolds | 804 |
# of scaffolds >= 2Kbp | 771 |
Scaffold N50 | 144 |
Scaffold L50 (Mbp) | 0.08 |
# of gaps | 20 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 0.58, 0.46, 0.25 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 1641 | 1379 |
transcript | 1488 | 1227 |
exon | 529 | 291 |
intron | 87 | 65 |
description: | ||
protein length (aa) | 496 | 409 |
exons per gene | 2.81 | 2 |
# of gene models | 10707 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Smit S, Derks MF, Bervoets S, Fahal A, van Leeuwen W, van Belkum A, van de Sande WW
Genome Sequence of Madurella mycetomatis mm55, Isolated from a Human Mycetoma Case in Sudan.
Genome Announc. 2016 May 26;4(3):. doi: 10.1128/genomeA.00418-16
Smit S, Derks MF, Bervoets S, Fahal A, van Leeuwen W, van Belkum A, van de Sande WW
Genome Sequence of Madurella mycetomatis mm55, Isolated from a Human Mycetoma Case in Sudan.
Genome Announc. 2016 May 26;4(3):. doi: 10.1128/genomeA.00418-16
Links
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Sordariomycetes Sordariomycetidae Sordariales
Funding
This project was not sequenced at the JGI.