Info • Pyricularia oryzae GY0011 v1.0

Status

[September 2021] The Pyricularia oryzae GY0011 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. The mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 41.58
Sequencing read coverage depth 24.38x
# of contigs 58
# of scaffolds 58
# of scaffolds >= 2Kbp 52
Scaffold N50 6
Scaffold L50 (Mbp) 2.26
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.78, 4.31, 4.18


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 598913423 595556860 99.4%
Other JGI_IsoSeq_consensus 66697 65916 98.8%
Other JGI_RNA_contigs 50193 48714 97.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1885 1659
transcript 1700 1484
exon 640 397
intron 114 87
description:
protein length (aa) 460 375
exons per gene 2.66 2
# of gene models 12197


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.