Info • Mayamaea pseudoterrestris NIES-4280

Status

The Mayamaea pseudoterrestris NIES-4280 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on March 2, 2023. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 627 models and the generation of the FilteredModels1 (GeneCatalog) gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 30.63
Sequencing read coverage depth 52x
# of contigs 41
# of scaffolds 41
# of scaffolds >= 2Kbp 41
Scaffold N50 10
Scaffold L50 (Mbp) 1.07
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.99, 2.78, 1.59


Gene Models FilteredModels1
length (bp) of: average median
gene 1700 1374
transcript 1606 1296
exon 916 678
intron 127 91
description:
protein length (aa) 535 432
exons per gene 1.75 1
# of gene models 10680


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.