Info • Meliniomyces sp. PMI_1271 v1.0

Status

[July 2019] The nuclear genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Meliniomyces sp. PMI_1271 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 62.84
Sequencing read coverage depth 45.35x
# of contigs 711
# of scaffolds 711
# of scaffolds >= 2Kbp 702
Scaffold N50 73
Scaffold L50 (Mbp) 0.24
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.79, 1.32, 1.09


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 48648 45818 94.2%
Ests est.fasta 61433308 60198294 98.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1720 1509
transcript 1551 1356
exon 502 315
intron 83 57
description:
protein length (aa) 447 371
exons per gene 3.09 3
# of gene models 17286


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.