Status
[January 2023] The genome sequence of Melampsora lini version 2.0 was not determined by the JGI.
The genome sequence was assembled from HiFi data.
The genome was provided by CSIRO on May 2022. The annotation was done by Emmanuelle Morin of INRAE using the JGI Annotation Pipeline.
This copy of the genome does include the mitochondrial chromosome or genes.
Summary statistics for the Melampsora lini v2.0 release are below.
[April 2025]
| Genome Assembly | |
| Genome Assembly size (Mbp) | 242.32 |
| Sequencing read coverage depth | 40x |
| # of contigs | 117 |
| # of scaffolds | 110 |
| # of scaffolds >= 2Kbp | 110 |
| Scaffold N50 | 8 |
| Scaffold L50 (Mbp) | 13.01 |
| # of gaps | 7 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 19.22, 18.65, 18.18 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | est.fasta | 794934809 | 791581223 | 99.6% |
| Other | Melli2_RNA_contigs | 106230 | 74549 | 70.2% |
| Gene Models | FilteredModels2 | |
| length (bp) of: | average | median |
| gene | 1603 | 1340 |
| transcript | 1219 | 984 |
| exon | 267 | 163 |
| intron | 110 | 81 |
| description: | ||
| protein length (aa) | 351 | 266 |
| exons per gene | 4.56 | 4 |
| # of gene models | 16654 |
Collaborators
- Peter Dodds, CSIRO, Canberra, Australia
- Jana Sperschneider, CSIRO, Canberra, Australia
- Sébastien Duplessis, INRAE, Nancy, France
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Sperschneider J, Chen J, Anderson C, Morin E, Zhang X, Lewis D, Henningsen E, Grigoriev IV, Rathjen JP, Jones DA, Duplessis S, Dodds PN
A Chromosome-Scale Genome Assembly of the Flax Rust Fungus Reveals the Two Unusually Large Effector Proteins, AvrM3 and AvrN.
Mol Plant Microbe Interact. 2025 May 28;():. doi: 10.1094/MPMI-04-25-0047-R
Sperschneider J, Chen J, Anderson C, Morin E, Zhang X, Lewis D, Henningsen E, Grigoriev IV, Rathjen JP, Jones DA, Duplessis S, Dodds PN
A Chromosome-Scale Genome Assembly of the Flax Rust Fungus Reveals the Two Unusually Large Effector Proteins, AvrM3 and AvrN.
Mol Plant Microbe Interact. 2025 May 28;():. doi: 10.1094/MPMI-04-25-0047-R
Links
- JGI PhyloGroup Portals: Fungi Dikarya Basidiomycota Pucciniomycotina Pucciniales
Funding
This project was not sequenced at the JGI.
