Status
[May 2015] The Melanospora tiffanyae F1KG0001 genome was sequenced using Illumina and assembled using AllPathsLG (Gnerre et al. 2010).
Summary statistics for the Melanospora tiffanyae F1KG0001
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 28.36 |
| Sequencing read coverage depth | 136.7 |
| # of contigs | 510 |
| # of scaffolds | 420 |
| # of scaffolds >= 2Kbp | 383 |
| Scaffold N50 | 50 |
| Scaffold L50 (Mbp) | 0.17 |
| # of gaps | 90 |
| % of scaffold length in gaps | 0.2% |
| Three largest Scaffolds (Mbp) | 0.61, 0.49, 0.45 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 28699 | 27114 | 94.5% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1658 | 1355 |
| transcript | 1512 | 1220 |
| exon | 608 | 385 |
| intron | 100 | 67 |
| description: | ||
| protein length (aa) | 428 | 331 |
| exons per gene | 2.49 | 2 |
| # of gene models | 8994 |
Collaborators
Derek Johnson, Oregon State University
Joey Spatafora, Oregon State University
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
