Status
The Mesotaenium endlicherianum SAG 12.97 genome assembly and gene models have not been determined by the JGI, but were downloaded from the Cheng et al., 2019 genome supplemental data share at figshare.com on November 21, 2019. Please note that this copy of the genome is not maintained by Cheng et al. and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Genome Assembly | |
Genome Assembly size (Mbp) | 173.77 |
Sequencing read coverage depth | 412x |
# of contigs | 26019 |
# of scaffolds | 13942 |
# of scaffolds >= 2Kbp | 1437 |
Scaffold N50 | 119 |
Scaffold L50 (Mbp) | 0.45 |
# of gaps | 12077 |
% of scaffold length in gaps | 9.7% |
Three largest Scaffolds (Mbp) | 1.84, 1.75, 1.55 |
Gene Models | ExternalModels | |
length (bp) of: | average | median |
gene | 5852 | 4456 |
transcript | 1749 | 1478 |
exon | 259 | 150 |
intron | 716 | 512 |
description: | ||
protein length (aa) | 466 | 362 |
exons per gene | 6.75 | 5 |
# of gene models | 11080 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Cheng S, Xian W, Fu Y, Marin B, Keller J, Wu T, Sun W, Li X, Xu Y, Zhang Y, Wittek S, Reder T, Günther G, Gontcharov A, Wang S, Li L, Liu X, Wang J, Yang H, Xu X, Delaux PM, Melkonian B, Wong GK, Melkonian M
Genomes of Subaerial Zygnematophyceae Provide Insights into Land Plant Evolution.
Cell. 2019 Nov 14;179(5):1057-1067.e14. doi: 10.1016/j.cell.2019.10.019
Cheng S, Xian W, Fu Y, Marin B, Keller J, Wu T, Sun W, Li X, Xu Y, Zhang Y, Wittek S, Reder T, Günther G, Gontcharov A, Wang S, Li L, Liu X, Wang J, Yang H, Xu X, Delaux PM, Melkonian B, Wong GK, Melkonian M
Genomes of Subaerial Zygnematophyceae Provide Insights into Land Plant Evolution.
Cell. 2019 Nov 14;179(5):1057-1067.e14. doi: 10.1016/j.cell.2019.10.019
Links
- JGI Algae EcoGroup Portal
- JGI PhyloGroup Portals: Archaeplastida Viridiplantae Streptophyta Zygnemophyceae
Funding
This project was not sequenced at the JGI.