Info • Mesotaenium endlicherianum SAG 12.97

Status

The Mesotaenium endlicherianum SAG 12.97 genome assembly and gene models have not been determined by the JGI, but were downloaded from the Cheng et al., 2019 genome supplemental data share at figshare.com on November 21, 2019. Please note that this copy of the genome is not maintained by Cheng et al. and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 173.77
Sequencing read coverage depth 412x
# of contigs 26019
# of scaffolds 13942
# of scaffolds >= 2Kbp 1437
Scaffold N50 119
Scaffold L50 (Mbp) 0.45
# of gaps 12077
% of scaffold length in gaps 9.7%
Three largest Scaffolds (Mbp) 1.84, 1.75, 1.55


Gene Models ExternalModels
length (bp) of: average median
gene 5852 4456
transcript 1749 1478
exon 259 150
intron 716 512
description:
protein length (aa) 466 362
exons per gene 6.75 5
# of gene models 11080


Genome Reference(s)

Funding

This project was not sequenced at the JGI.