Info • Mesostigma viride CCAC 1140

Status

The Mesostigma viride CCAC 1140 genome assembly and gene models have not been determined by the JGI, but were downloaded from the CNGB Nucleotide Sequence Archive (accession CNP0000228) on July 21, 2020. Please note that this copy of the genome is not maintained by CNGB and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Mesostigma viride CCAC 1140 release are below.
Genome Assembly
Genome Assembly size (Mbp) 281.41
Sequencing read coverage depth
# of contigs 26665
# of scaffolds 6924
# of scaffolds >= 2Kbp 6896
Scaffold N50 730
Scaffold L50 (Mbp) 0.11
# of gaps 19741
% of scaffold length in gaps 13.0%
Three largest Scaffolds (Mbp) 0.95, 0.63, 0.56


Gene Models ExternalModels
length (bp) of: average median
gene 6456 4918
transcript 1518 1143
exon 254 137
intron 993 797
description:
protein length (aa) 506 381
exons per gene 5.98 5
# of gene models 9300


Genome Reference(s)

Funding

This project was not sequenced at the JGI.