Info • Mesostigma viride CCAC 1140

Status

The Mesostigma viride CCAC 1140 genome assembly and gene models have not been determined by the JGI, but were downloaded from the CNGB Nucleotide Sequence Archive (accession CNP0000228) on July 21, 2020. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 511 models and the generation of the FilteredModels1 (GeneCatalog) gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by CNGB and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 281.41
Sequencing read coverage depth 746.86X
# of contigs 26665
# of scaffolds 6924
# of scaffolds >= 2Kbp 6896
Scaffold N50 730
Scaffold L50 (Mbp) 0.11
# of gaps 19741
% of scaffold length in gaps 13.0%
Three largest Scaffolds (Mbp) 0.95, 0.63, 0.56


Gene Models FilteredModels1
length (bp) of: average median
gene 6648 5160
transcript 1566 1188
exon 255 137
intron 990 799
description:
protein length (aa) 522 396
exons per gene 6.14 5
# of gene models 8789


Genome Reference(s)

Funding

This project was not sequenced at the JGI.