Info • Mesostigma viride NIES-296


The Mesostigma viride NIES-296 genome sequence and gene models have not been determined by the JGI, but were downloaded from NCBI (GCA_009746045.1, GSE123852) on July 18, 2020. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Summary statistics for the Mesostigma viride NIES-296 release are below.
Genome Assembly
Genome Assembly size (Mbp) 441.70
Sequencing read coverage depth
# of contigs 3022
# of scaffolds 2352
# of scaffolds >= 2Kbp 2343
Scaffold N50 41
Scaffold L50 (Mbp) 2.56
# of gaps 670
% of scaffold length in gaps 4.3%
Three largest Scaffolds (Mbp) 14.33, 12.14, 10.09

Gene Models ExternalModels
length (bp) of: average median
gene 8254 4231
transcript 2497 1579
exon 422 175
intron 1174 799
protein length (aa) 609 413
exons per gene 5.91 3
# of gene models 29795

Genome Reference(s)


This project was not sequenced at the JGI.