Info • Metarhizium robertsii ARSEF 23

Status

The genome sequence and gene models of Metarhizium robertsii have not been determined by the JGI, but were downloaded from NCBI on Oct 25, 2016. In order to allow comparative analyses with other fungal genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Assembly Method :: SOAPdenovo v. 1.05; Newbler v. 2.3
Sequencing Technology :: Illumina HiSeq; 454

 

Summary statistics for the Metarhizium robertsii ARSEF 23 release are below.
Genome Assembly
Genome Assembly size (Mbp) 41.66
Sequencing read coverage depth 147.33x
# of contigs 886
# of scaffolds 90
# of scaffolds >= 2Kbp 83
Scaffold N50 4
Scaffold L50 (Mbp) 4.49
# of gaps 796
% of scaffold length in gaps 6.5%
Three largest Scaffolds (Mbp) 7.41, 6.07, 5.42


Gene Models ExternalModels
length (bp) of: average median
gene 1615 1346
transcript 1475 1221
exon 570 330
intron 90 68
description:
protein length (aa) 492 407
exons per gene 2.59 2
# of gene models 11688


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Hu X, Xiao G, Zheng P, Shang Y, Su Y, Zhang X, Liu X, Zhan S, St Leger RJ, Wang C
Trajectory and genomic determinants of fungal-pathogen speciation and host adaptation.
Proc Natl Acad Sci U S A. 2014 Nov 25;111(47):16796-801. doi: 10.1073/pnas.1412662111

Gao Q, Jin K, Ying SH, Zhang Y, Xiao G, Shang Y, Duan Z, Hu X, Xie XQ, Zhou G, Peng G, Luo Z, Huang W, Wang B, Fang W, Wang S, Zhong Y, Ma LJ, St Leger RJ, Zhao GP, Pei Y, Feng MG, Xia Y, Wang C
Genome sequencing and comparative transcriptomics of the model entomopathogenic fungi Metarhizium anisopliae and M. acridum.
PLoS Genet. 2011 Jan 6;7(1):e1001264. doi: 10.1371/journal.pgen.1001264

Funding

This project was not sequenced at the JGI.