Info • Microbotryum lychnidis-dioicae p1A1 Lamole

Status

The genome sequence and gene models of Microbotryum lychnidis-dioicae p1A1 Lamole have not been determined by the JGI, but were downloaded from NCBI on Oct 25, 2016. In order to allow comparative analyses with other fungal genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into Mycocosm. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Assembly Method :: Newbler v.MapAsmResearch-04/19/2010-patch-08/17/2010
Sequencing Technology :: 454

 

Summary statistics for the Microbotryum lychnidis-dioicae p1A1 Lamole release are below.
Genome Assembly
Genome Assembly size (Mbp) 26.14
Sequencing read coverage depth 15x
# of contigs 1888
# of scaffolds 1231
# of scaffolds >= 2Kbp 319
Scaffold N50 42
Scaffold L50 (Mbp) 0.19
# of gaps 657
% of scaffold length in gaps 3.6%
Three largest Scaffolds (Mbp) 0.87, 0.67, 0.63


Gene Models ExternalModels
length (bp) of: average median
gene 2438 2187
transcript 1959 1686
exon 347 196
intron 103 82
description:
protein length (aa) 538 440
exons per gene 5.64 5
# of gene models 7819


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Perlin MH, Amselem J, Fontanillas E, Toh SS, Chen Z, Goldberg J, Duplessis S, Henrissat B, Young S, Zeng Q, Aguileta G, Petit E, Badouin H, Andrews J, Razeeq D, Gabaldón T, Quesneville H, Giraud T, Hood ME, Schultz DJ, Cuomo CA
Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus.
BMC Genomics. 2015 Jun 16;16():461. doi: 10.1186/s12864-015-1660-8

Funding

This project was not sequenced at the JGI.