Info • Micromonas sp. AD1 metagenome extracted assembly

Status

The metagenome-assembled genome of Micromonas sp. AD1 and gene models were not determined by the Joint Genome Institute (JGI), but were provided by Anthony Duncan and Thomas Mock. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 21.11
# of contigs 1539
# of scaffolds 1539
# of scaffolds >= 2Kbp 1486
Scaffold N50 304
Scaffold L50 (Mbp) 0.02
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.11, 0.10, 0.10


Gene Models ExternalModels
length (bp) of: average median
gene 1627 1275
transcript 1457 1149
exon 673 465
intron 148 132
description:
protein length (aa) 485 382
exons per gene 2.17 2
# of gene models 11269


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Duncan A, Barry K, Daum C, Eloe-Fadrosh E, Roux S, Schmidt K, Tringe SG, Valentin KU, Varghese N, Salamov A, Grigoriev IV, Leggett RM, Moulton V, Mock T
Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans.
Microbiome. 2022 Apr 28;10(1):67. doi: 10.1186/s40168-022-01254-7

Funding

This project was not sequenced at the JGI.