Info • Microglena sp. YARC

Status

The Microglena sp. YARC genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were provided by Naihao Ye, Xiaowen Zhang, and Thomas Mock. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 572.69
Sequencing read coverage depth 150x
# of contigs 6848
# of scaffolds 3206
# of scaffolds >= 2Kbp 2970
Scaffold N50 2
Scaffold L50 (Mbp) 94.76
# of gaps 3642
% of scaffold length in gaps 0.8%
Three largest Scaffolds (Mbp) 194.87, 94.76, 63.21


Gene Models ExternalModels
length (bp) of: average median
gene 10020 7368
transcript 1396 1032
exon 230 146
intron 1701 1302
description:
protein length (aa) 465 344
exons per gene 6.07 5
# of gene models 19590


Collaborators

  • Thomas Mock at University of East Anglia, UK
  • Xiaowen Zhang at Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, China
  • Naihao Ye at Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, China

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Ye N, Han W, Toseland A, Wang Y, Fan X, Xu D, van Oosterhout C, Grigoriev IV, Tagliabue A, Zhang J, Zhang Y, Ma J, Qiu H, Li Y, Zhang X, Mock T
The role of zinc in the adaptive evolution of polar phytoplankton.
Nat Ecol Evol. 2022 Jul;6(7):965-978. doi: 10.1038/s41559-022-01750-x

Funding

This project was not sequenced at the JGI.