Status
(Dec 2014) The Microascus trigonosporus var. trigonosporus genome was sequenced using Illumina and assembled with AllPathsLG.
Summary statistics for the Microascus trigonosporus CBS
218.31 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 36.10 |
| Sequencing read coverage depth | 104 |
| # of contigs | 143 |
| # of scaffolds | 13 |
| # of scaffolds >= 2Kbp | 12 |
| Scaffold N50 | 4 |
| Scaffold L50 (Mbp) | 4.34 |
| # of gaps | 130 |
| % of scaffold length in gaps | 0.2% |
| Three largest Scaffolds (Mbp) | 5.53, 5.01, 4.44 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 21741 | 21428 | 98.6% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1715 | 1474 |
| transcript | 1540 | 1308 |
| exon | 528 | 331 |
| intron | 94 | 68 |
| description: | ||
| protein length (aa) | 434 | 355 |
| exons per gene | 2.91 | 2 |
| # of gene models | 13087 |
Collaborators
Kathryn Bushley, University of Minnesota
Derek Johnson, Oregon State University
Joey Spatafora, Oregon State University
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
