Status
Version 1.0. February 2012. This draft genome assembly of Mixia osmundae was sequenced using Illumina technology.
Summary statistics for the Mixia osmundae IAM 14324 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 13.63 |
| Sequencing read coverage depth | 150.9x |
| # of contigs | 204 |
| # of scaffolds | 156 |
| # of scaffolds >= 2Kbp | 25 |
| Scaffold N50 | 5 |
| Scaffold L50 (Mbp) | 1.19 |
| # of gaps | 48 |
| % of scaffold length in gaps | 0.3% |
| Three largest Scaffolds (Mbp) | 2.33, 1.39, 1.35 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | RNAseq ESTs assembled with RNNotator | 23482 | 22315 | 95.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1837 | 1528 |
| transcript | 1615 | 1332 |
| exon | 355 | 184 |
| intron | 65 | 54 |
| description: | ||
| protein length (aa) | 500 | 399 |
| exons per gene | 4.54 | 4 |
| # of gene models | 6903 |
Collaborators
- Merje Toome, Purdue University
- Cathie Aime, Purdue University
- Joey Spatafora, Oregon State Univerisity
- Igor Grigoriev, DOE Joint Genome Institute
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Toome M, Ohm RA, Riley RW, James TY, Lazarus KL, Henrissat B, Albu S, Boyd A, Chow J, Clum A, Heller G, Lipzen A, Nolan M, Sandor L, Zvenigorodsky N, Grigoriev IV, Spatafora JW, Aime MC
Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae.
New Phytol. 2014 Apr;202(2):554-564. doi: 10.1111/nph.12653
Toome M, Ohm RA, Riley RW, James TY, Lazarus KL, Henrissat B, Albu S, Boyd A, Chow J, Clum A, Heller G, Lipzen A, Nolan M, Sandor L, Zvenigorodsky N, Grigoriev IV, Spatafora JW, Aime MC
Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae.
New Phytol. 2014 Apr;202(2):554-564. doi: 10.1111/nph.12653
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
