Info • Monoraphidium neglectum SAG 48.87


The genome sequence and gene models of Monoraphidium neglectum have not been determined by the JGI, but were downloaded from NCBI, on June 20, 2017. In order to allow comparative analyses with other genomes sequenced by the Joint Genome Institute, a copy of this genome is incorporated into the JGI Genome Portal. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Summary statistics for the Monoraphidium neglectum release are below.
Genome Assembly
Genome Assembly size (Mbp) 69.71
Sequencing read coverage depth 49.30x
# of contigs 11902
# of scaffolds 6720
# of scaffolds >= 2Kbp 6720
Scaffold N50 1302
Scaffold L50 (Mbp) 0.02
# of gaps 5182
% of scaffold length in gaps 3.4%
Three largest Scaffolds (Mbp) 0.14, 0.11, 0.10

Gene Models ExternalModels
length (bp) of: average median
gene 2265 1802
transcript 1045 795
exon 207 129
intron 304 256
protein length (aa) 348 265
exons per gene 5.04 4
# of gene models 16755

Genome Reference(s)


This project was not sequenced at the JGI.