Status
The Monascus ruber NRRL 1597 genome was sequenced using the Illumina platform and assembled with Velvet and ALLPathsLG. The genome was annotated with the JGI annotation pipeline and custom analyses.
Summary statistics for the Monascus ruber NRRL 1597 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 24.80 |
| Sequencing read coverage depth | 123.4 |
| # of contigs | 362 |
| # of scaffolds | 320 |
| # of scaffolds >= 2Kbp | 298 |
| Scaffold N50 | 49 |
| Scaffold L50 (Mbp) | 0.15 |
| # of gaps | 42 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 0.50, 0.49, 0.49 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | RNAseq_contigs | 28227 | 27222 | 96.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1769 | 1515 |
| transcript | 1588 | 1344 |
| exon | 507 | 301 |
| intron | 87 | 67 |
| description: | ||
| protein length (aa) | 454 | 374 |
| exons per gene | 3.13 | 3 |
| # of gene models | 9650 |
Collaborators
Joey Spatafora, Department of Botany and Plant Pathology, Oregon State University
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
