Info • Morchella anatolica PhC 233 v1.0

Status

[June 2021] The Morchella anatolica PhC233 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 57.52
Sequencing read coverage depth
# of contigs 211
# of scaffolds 211
# of scaffolds >= 2Kbp 210
Scaffold N50 12
Scaffold L50 (Mbp) 1.64
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.48, 3.86, 2.72


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 58161 56194 96.6%
Ests est.fasta 152306423 150935255 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1824 1567
transcript 1602 1357
exon 448 287
intron 88 66
description:
protein length (aa) 451 360
exons per gene 3.58 3
# of gene models 10630


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.