Status
[April 2021] The Morchella conifericola Mel-32 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 52.57 |
| Sequencing read coverage depth | 51.34x |
| # of contigs | 208 |
| # of scaffolds | 208 |
| # of scaffolds >= 2Kbp | 206 |
| Scaffold N50 | 39 |
| Scaffold L50 (Mbp) | 0.44 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.61, 1.26, 1.07 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 61368 | 53491 | 87.2% |
| Ests | est.fasta | 28207608 | 27704716 | 98.2% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1861 | 1597 |
| transcript | 1624 | 1369 |
| exon | 440 | 275 |
| intron | 90 | 67 |
| description: | ||
| protein length (aa) | 464 | 371 |
| exons per gene | 3.69 | 3 |
| # of gene models | 10590 |
Collaborators
- Francis Martin at INRA-Université de Lorraine
- Greg Bonito at Michigan State University
Links
- 1000 Fungal Genomes Project
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Pezizomycetes Pezizales Morchellaceae Morchella
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
