Status
Assembly v2 (September 2013) is an improved draft assembly. A total of 473 scaffolds and 49.9 Mbp were assembled with Illumina gDNAs by AllPathsLG and then patched with PacBio gDNAs by PBJelly.
Summary statistics for the Mortierella elongata AG-77 v2.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 49.86 |
| Sequencing read coverage depth | 112.8x |
| # of contigs | 742 |
| # of scaffolds | 473 |
| # of scaffolds >= 2Kbp | 343 |
| Scaffold N50 | 31 |
| Scaffold L50 (Mbp) | 0.52 |
| # of gaps | 269 |
| % of scaffold length in gaps | 0.3% |
| Three largest Scaffolds (Mbp) | 1.53, 1.23, 1.20 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 40340 | 37303 | 92.5% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1956 | 1682 |
| transcript | 1516 | 1248 |
| exon | 435 | 240 |
| intron | 179 | 120 |
| description: | ||
| protein length (aa) | 457 | 364 |
| exons per gene | 3.49 | 3 |
| # of gene models | 14969 |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Uehling J, Gryganskyi A, Hameed K, Tschaplinski T, Misztal PK, Wu S, Desirò A, Vande Pol N, Du Z, Zienkiewicz A, Zienkiewicz K, Morin E, Tisserant E, Splivallo R, Hainaut M, Henrissat B, Ohm R, Kuo A, Yan J, Lipzen A, Nolan M, LaButti K, Barry K, Goldstein AH, Labbé J, Schadt C, Tuskan G, Grigoriev I, Martin F, Vilgalys R, Bonito G
Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens.
Environ Microbiol. 2017 Aug;19(8):2964-2983. doi: 10.1111/1462-2920.13669
Uehling J, Gryganskyi A, Hameed K, Tschaplinski T, Misztal PK, Wu S, Desirò A, Vande Pol N, Du Z, Zienkiewicz A, Zienkiewicz K, Morin E, Tisserant E, Splivallo R, Hainaut M, Henrissat B, Ohm R, Kuo A, Yan J, Lipzen A, Nolan M, LaButti K, Barry K, Goldstein AH, Labbé J, Schadt C, Tuskan G, Grigoriev I, Martin F, Vilgalys R, Bonito G
Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens.
Environ Microbiol. 2017 Aug;19(8):2964-2983. doi: 10.1111/1462-2920.13669
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
