Status
The Moniliophthora roreri MCA 2997 genome sequence and gene models were not determined by the Joint Genome Institute (JGI), but were downloaded from NCBI on Nov 10, 2020. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 2495 models from Moniliophthora roreri MCA 2997 and the generation of the FilteredModels1 gene track. All published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.
Genome Assembly | |
Genome Assembly size (Mbp) | 52.06 |
Sequencing read coverage depth | 15.0x |
# of contigs | 3062 |
# of scaffolds | 3062 |
# of scaffolds >= 2Kbp | 2660 |
Scaffold N50 | 271 |
Scaffold L50 (Mbp) | 0.05 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 0.57, 0.45, 0.37 |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1628 | 1408 |
transcript | 1303 | 1090 |
exon | 203 | 124 |
intron | 62 | 56 |
description: | ||
protein length (aa) | 434 | 363 |
exons per gene | 6.42 | 5 |
# of gene models | 15415 |
Genome Reference(s)
Meinhardt LW, Costa GG, Thomazella DP, Teixeira PJ, Carazzolle MF, Schuster SC, Carlson JE, Guiltinan MJ, Mieczkowski P, Farmer A, Ramaraj T, Crozier J, Davis RE, Shao J, Melnick RL, Pereira GA, Bailey BA
Genome and secretome analysis of the hemibiotrophic fungal pathogen, Moniliophthora roreri, which causes frosty pod rot disease of cacao: mechanisms of the biotrophic and necrotrophic phases.
BMC Genomics. 2014 Feb 27;15():164. doi: 10.1186/1471-2164-15-164
Links
- JGI PhyloGroup Portals: Fungi Dikarya Basidiomycota Agaricomycotina Agaricomycetes Agaricales