Status
The genome sequence and gene models of Mucor ambiguus NBRC 6742 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.
Summary statistics for the Mucor ambiguus NBRC 6742 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 40.74 |
| Sequencing read coverage depth | |
| # of contigs | 8268 |
| # of scaffolds | 1283 |
| # of scaffolds >= 2Kbp | 892 |
| Scaffold N50 | 111 |
| Scaffold L50 (Mbp) | 0.11 |
| # of gaps | 6985 |
| % of scaffold length in gaps | 22.0% |
| Three largest Scaffolds (Mbp) | 0.54, 0.51, 0.51 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1636 | 1334 |
| transcript | 1396 | 1128 |
| exon | 341 | 185 |
| intron | 79 | 61 |
| description: | ||
| protein length (aa) | 465 | 376 |
| exons per gene | 4.10 | 3 |
| # of gene models | 11343 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Lebreton A, Corre E, Jany JL, Brillet-Guéguen L, Pèrez-Arques C, Garre V, Monsoor M, Debuchy R, Le Meur C, Coton E, Barbier G, Meslet-Cladière L
Comparative genomics applied to Mucor species with different lifestyles.
BMC Genomics. 2020 Feb 10;21(1):135. doi: 10.1186/s12864-019-6256-2
Lebreton A, Corre E, Jany JL, Brillet-Guéguen L, Pèrez-Arques C, Garre V, Monsoor M, Debuchy R, Le Meur C, Coton E, Barbier G, Meslet-Cladière L
Comparative genomics applied to Mucor species with different lifestyles.
BMC Genomics. 2020 Feb 10;21(1):135. doi: 10.1186/s12864-019-6256-2
Links
- JGI PhyloGroup Portals: Fungi Mucoromycota Mucoromycotina Mucorales
Funding
This project was not sequenced at the JGI.
