Info • Mucor lusitanicus CBS277.49 v3.0

Status

[May 2022] The Mucor lusitanicus CBS277.49 v3.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Compared to the v2.0 release of this genome, this updated version provides improved contiguity, reducing # scaffolds from 26 to 12. The mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 36.61
Sequencing read coverage depth 124.09x
# of contigs 20
# of scaffolds 12
# of scaffolds >= 2Kbp 12
Scaffold N50 4
Scaffold L50 (Mbp) 4.61
# of gaps 8
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.40, 5.57, 4.90


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 60463086 59941236 99.1%
Other IsoSeq_hq_reads 46614 46173 99.1%
Other Trinity_assembled_Illumina_transcriptome 35685 30157 84.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1813 1523
transcript 1565 1303
exon 350 197
intron 73 62
description:
protein length (aa) 475 386
exons per gene 4.47 4
# of gene models 11616


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Lax C, Mondo SJ, Osorio-Concepción M, Muszewska A, Corrochano-Luque M, Gutiérrez G, Riley R, Lipzen A, Guo J, Hundley H, Amirebrahimi M, Ng V, Lorenzo-Gutiérrez D, Binder U, Yang J, Song Y, Cánovas D, Navarro E, Freitag M, Gabaldón T, Grigoriev IV, Corrochano LM, Nicolás FE, Garre V
Symmetric and asymmetric DNA N6-adenine methylation regulates different biological responses in Mucorales.
Nat Commun. 2024 Jul 18;15(1):6066. doi: 10.1038/s41467-024-50365-2

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.