Status
(Dec 2014) The Myrothecium inundatum CBS120646 genome was sequenced using Illumina and assembled using AllPathsLG.
Summary statistics for the Myrothecium inundatum CBS
120646 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 39.21 |
| Sequencing read coverage depth | 95 |
| # of contigs | 352 |
| # of scaffolds | 62 |
| # of scaffolds >= 2Kbp | 56 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 2.01 |
| # of gaps | 290 |
| % of scaffold length in gaps | 1.1% |
| Three largest Scaffolds (Mbp) | 5.52, 4.43, 3.08 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 30194 | 29836 | 98.8% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1785 | 1513 |
| transcript | 1627 | 1373 |
| exon | 571 | 357 |
| intron | 87 | 62 |
| description: | ||
| protein length (aa) | 458 | 367 |
| exons per gene | 2.85 | 2 |
| # of gene models | 13553 |
Collaborators
Kathryn Bushley, University of Minnesota
Derek Johnson, Oregon State University
Joey Spatafora, Oregon State University
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
