Info • Myxozyma melibiosi Phaff 52-87 v1.0

Status

[June 2018] The Myxozyma melibiosi Phaff 52-87 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Myxozyma melibiosi v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 15.33
Sequencing read coverage depth 354.81x
# of contigs 24
# of scaffolds 24
# of scaffolds >= 2Kbp 24
Scaffold N50 5
Scaffold L50 (Mbp) 0.90
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.02, 1.20, 1.10


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 17644 16197 91.8%
Ests est.fasta 144399750 140634425 97.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1849 1629
transcript 1710 1498
exon 607 351
intron 79 65
description:
protein length (aa) 481 408
exons per gene 2.82 2
# of gene models 6299


Collaborators

Jon Magnuson, Pacific Northwest National Laboratory, USA

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Czajka JJ, Han Y, Kim J, Mondo SJ, Hofstad BA, Robles A, Haridas S, Riley R, LaButti K, Pangilinan J, Andreopoulos W, Lipzen A, Yan J, Wang M, Ng V, Grigoriev IV, Spatafora JW, Magnuson JK, Baker SE, Pomraning KR
Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces.
Front Bioeng Biotechnol. 2024;12():1356551. doi: 10.3389/fbioe.2024.1356551

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.