Status
[June 2022] The draft genome of Naganishia friedmannii 6030m was generated externally using Illumina and Oxford Nanopore long read technology. Sequence data was assembled with SPAdes Mitochondrial genome was assembled separately and is available in the downloads section.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 22.26 |
| Sequencing read coverage depth | 229.62x |
| # of contigs | 127 |
| # of scaffolds | 103 |
| # of scaffolds >= 2Kbp | 90 |
| Scaffold N50 | 11 |
| Scaffold L50 (Mbp) | 0.65 |
| # of gaps | 24 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 2.04, 1.38, 1.29 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 34597 | 32962 | 95.3% |
| Ests | est.fasta | 32094396 | 30855533 | 96.1% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 2333 | 2041 |
| transcript | 1877 | 1589 |
| exon | 282 | 164 |
| intron | 82 | 68 |
| description: | ||
| protein length (aa) | 539 | 444 |
| exons per gene | 6.67 | 6 |
| # of gene models | 7353 |
Collaborators
- Lara Vimercati, University of Colorado at Boulder, USA.
Links
- JGI PhyloGroup Portals: Fungi Dikarya Basidiomycota Agaricomycotina Tremellomycetes
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
