Info • Naganishia vishniacii ANT03-052 v1.1

Status

[June 2020] The Naganishia vishniacii genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R41043 (Gnerre et al., 2010).
A 30.9 Kb mitochondrial genome was assembled separately and is available in the download section.

Summary statistics for the Naganishia vishniacii ANT03-052 v1.1 release are below.
Genome Assembly
Genome Assembly size (Mbp) 19.68
Sequencing read coverage depth 146.7x
# of contigs 76
# of scaffolds 38
# of scaffolds >= 2Kbp 38
Scaffold N50 8
Scaffold L50 (Mbp) 1.08
# of gaps 38
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.84, 1.61, 1.33


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 56096 43616 77.8%
Ests est.fasta 160382276 156744579 97.7%


Gene Models ExternalModels2
length (bp) of: average median
gene 2263 1842
transcript 1750 1395
exon 242 134
intron 84 63
description:
protein length (aa) 583 465
exons per gene 7.23 6
# of gene models 6029


Collaborators

  • Laurie Connell, University of Maine, ME, USA
  • Martín Moliné, Universidad Nacional del Comahue, Bariloche, Argentina

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Nizovoy P, Bellora N, Haridas S, Sun H, Daum C, Barry K, Grigoriev IV, Libkind D, Connell LB, Moliné M
Unique genomic traits for cold adaptation in Naganishia vishniacii, a polyextremophile yeast isolated from Antarctica.
FEMS Yeast Res. 2021 Jan 22;21(1):. doi: 10.1093/femsyr/foaa056

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.