Info • Nakaseomyces delphensis CBS 2170

Status

The genome sequence and gene models of Nakaseomyces delphensis CBS 2170 were not determined by the Joint Genome Institute (JGI), but were provided by the Stajich lab in June, 2016. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by the Stajich lab and is therefore not automatically updated.

Summary statistics for the Nakaseomyces delphensis CBS 2170 release are below.
Genome Assembly
Genome Assembly size (Mbp) 10.93
Sequencing read coverage depth NA
# of contigs 159
# of scaffolds 28
# of scaffolds >= 2Kbp 25
Scaffold N50 5
Scaffold L50 (Mbp) 1.01
# of gaps 131
% of scaffold length in gaps 0.8%
Three largest Scaffolds (Mbp) 1.34, 1.18, 1.14


Gene Models ExternalModels
length (bp) of: average median
gene 1502 1251
transcript 1497 1248
exon 1471 1224
intron 288 223
description:
protein length (aa) 499 416
exons per gene 1.02 1
# of gene models 5103


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Gabaldón T, Martin T, Marcet-Houben M, Durrens P, Bolotin-Fukuhara M, Lespinet O, Arnaise S, Boisnard S, Aguileta G, Atanasova R, Bouchier C, Couloux A, Creno S, Almeida Cruz J, Devillers H, Enache-Angoulvant A, Guitard J, Jaouen L, Ma L, Marck C, Neuvéglise C, Pelletier E, Pinard A, Poulain J, Recoquillay J, Westhof E, Wincker P, Dujon B, Hennequin C, Fairhead C
Comparative genomics of emerging pathogens in the Candida glabrata clade.
BMC Genomics. 2013 Sep 14;14():623. doi: 10.1186/1471-2164-14-623

Funding

This project was not sequenced at the JGI.